makeGPS Wrapper Function for generating background GPS repository for sigora and ora

makeGPS Wrapper Function for generating background GPS repository for sigora and ora

makeGPS_wrappR(ids, keytype = "UNIPROT", target = c("KEGG", "GO", "reactome"))

Arguments

ids

Character vector of gene symbols (experimental background)
keytype

default UNIPROT
target

Character, database to be used to generate GPS repository ("KEGG", "GO", "reactome")

Value

A GPS repository based on the self specified background in ids, see makeGPS for more information.

See also

makeGPS

Examples


data("exampleUniprotIDs", package = "prora")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs)
#> 'select()' returned 1:many mapping between keys and columns
#> Joining, by = "pathwayID"
#> Time difference of 0.695225 secs
#> Time difference of 1.145443 secs
if (FALSE) {
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "GO")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "react")
}