wrapper setting the correct parameters seqinr::read.fasta for reading peptide sequences

peptides which do not have protein assignment drop out

readPeptideFasta(file)

Arguments

file	- fasta file

Value

list with sequences

Examples

library(seqinr)
#> 
#> Attaching package: 'seqinr'
#> The following object is masked from 'package:dplyr':
#> 
#>     count

file = system.file("extdata/fgcz_contaminants2021_20210929.fasta.gz",package = "prozor")
fasta = readPeptideFasta(file)