fgsea_msigdb_collections.Rdretrieve several msigdbr collections as fgsea compatible lists
fgsea_msigdb_collections(msigCollection, species = "Homo sapiens")
| msigCollection | msigdb collection |
|---|---|
| species | species default "Homo sapiens" |
list of colletions
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()