run for all contrasts — run_fgsea_for_allContrasts • prora

run for all contrasts

run_fgsea_for_allContrasts(
  allrnk,
  geneSet,
  nperm = 10000,
  minSize = 25,
  maxSize = 500
)

Arguments

allrnk	list of rank arrays
geneSet	single list geneset (e.g. )
nperm	number permutations
minSize	minimum geneset size
maxSize	maximum geneset size

See also

Other fgsea: fgsea_leading_edge_too_char(), fgsea_msigdb_collections(), fgsea_msigdb(), fgsea_rank_contrasts(), fgsea_rank(), getMsigdbGenesets(), run_fgsea_for_allGeneSets()