used to analyse a single contrast with various genesets — run_fgsea_for_allGeneSets • prora

used to analyse a single contrast with various genesets

run_fgsea_for_allGeneSets(
  allrnk,
  geneSets,
  nperm = 10000,
  minSize = 25,
  maxSize = 500
)

Arguments

allrnk	ranklist
geneSets	list of gene sets
nperm	number of permutations
minSize	minimum geneset size
maxSize	maximum geneset size

See also

Other fgsea: fgsea_leading_edge_too_char(), fgsea_msigdb_collections(), fgsea_msigdb(), fgsea_rank_contrasts(), fgsea_rank(), getMsigdbGenesets(), run_fgsea_for_allContrasts()